Monday 

Oct. 25

Tuesday 

Oct. 26

Wednesday

Oct 27

Thursday 

Oct. 28

Friday

Oct. 29

Saturday

Oct. 30

9 :00

12 :00

Introduction to the course and people

Lois + Meren

Brief introduction to microbial ‘omics and anvi’o

(Lecture) 

Meren

Short-read assembly

(Lecture) 

Chikhi

Genome-resolved metagenomics: key concepts

(Lecture)

Meren

Genomic insights into microbial metabolism

(Lecture)

Fuessel

Genomic insights into microbial metabolism I

(Lab)

Veseli

Pangenomics

(Lecture)

Meren 

Pangenomics

(Lab)

Meren

A nexus between pangenomes and metagenomes

(Lecture)

Meren

Phylogenomics

(Lab)

Meren

known and unknown genes in the environment

(lecture)

Fernandez

-Guerra

13 :30-

14 :00

Flash Talks

Flash Talks

Flash Talks

Flash Talks

Flash Talks

14 :30-

18 :00

Shotgun metagenomics, and metagenomic read recruitment

(Lecture)

Meren

A metagenomic read recruitment exercise

(Lab) 

Meren

Metagenomics Binning and Refinement

(Lecture)

Delmont

Genomic insights into microbial metabolism II

(Lab)

Iva 

Leveraging SCGs to co-investigate the ecology and evolution

(Seminar)

Schechter

Pangenomics (cont’d)

(Lab)

Meren

A metapangenomics story: Wolbachia of wild Culex mosquitoes

(Seminar)

Reveillaud

Phylogenomics (cont’d)

(Lab)

Meren

Discussion on microbial population

Meren

Plankton genomics

Delmont

known and unknown genes in the environment

(Lab)

Fernandez

-Guerra

Monday 

Nov. 1

Tuesday 

Nov. 2

Wednesday

Nov. 3

Thursday 

Nov. 4

Friday

Nov. 5

Saturday

Oct. 30

9 :00

12 :00

metagenomics binning

(Lecture ) 

Quince

strain resolution
continued

Quince

Machine learning applications for microbial omic’s (Lecture + lab)

Quince

Climbing the omics complexity ladder - Exploration of marine protists with Tara Oceans
(lecture)
 Pelletier

Strain deconvolution with Strainberry 

(Lecture)

Vicedomini

Contact genomic: an alternative use of 3C/Hi-C data for (Meta)genomes annotations and scaffolding

(Lecture)

Marbouti

Metabolic

Network reconstruction

(Lecture + lab)
Eveillard

NEMEA room check out

13 :30-

14 :00

Flash Talks

Flash Talks

Flash Talks

14 :30-

18 :00

metagenomics binning and snakemake

(lab) 

Raguideau

strain resolution
continued
(lab + lecture)

Quince

Towards omics-driven correlative models
(Lecture)
Faure

Long read genomics with Nanopore

(Lab)

James

Strain deconvolution with Strainberry 

(Lab)

Contact genomic: an alternative use of 3C/Hi-C data for (Meta)genomes annotations and scaffolding

(Lecture)

Marbouti

Metabolic

Network reconstruction