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8th
EBAME Workshop on Computational
Microbial
Ecogenomics
October
23
- November 3 , 2023 in Brest -
France
Faculty
and teaching assistants
Andrea
Telatin is a bioinformatics
researcher at the Earlham Institute (UK)
within the Gut Microbes and Health
Institute Strategic Programme (GMH),
providing support and training for
metagenomics and microbiome-related
analyses.
Antonio
Fernandez-Guerra is an assistant
professor at the Globe institute in
Copenhaguen (Denmark). Antonio has
worked on ecological implications of the
uncharacterized functional fraction of
microbial genomes and metagenomes. He is
now developing new computational
approaches for paleogenomics.
Chris
Quince.
Microbiomics Group Leader at the Earlham
institute (IK). Chris develops novel
algorithms and statistics for resolving
microbial species and strains from
metagenomics data.
Christophe
Blanchet is at the french
bioinformatics institute and is
providing support with virtual machine
design for the EBAME course.
Clemence
Frioux is a junior
researcher at INRIA in Bordeaux. She is
developing advanced computational
methods to explore microbial metabolism
in environmental samples.
Damien
Eveillard. Professor at
the Department of Computer Science,
Universite de Nantes (France). His
research topic concerns systems biology
and development of new computational
approaches for biological modeling. His
recent interests focus on metabolic
modeling of genome-scale microbial
ecosystems.
Eric
Pelletier is senior
researcher at CEA / Genoscope. He uses
environmental genomics approaches to
study genes, organisms and communities
structures and functions and their
relatioships with environment. He works
on Tara Oceans project, focusing mainly
on microbial eukaryote plankton
Evelien
Adriaenssens is a group
leader et the Quadram Institutes (UK),
working as
a molecular and computational
microbiologist with a passion for
everything viral.
Florian
Trigodet is a a postdoctoral
researcher in the
Ecosystem Data
Science group in Oldenburg.
Florian is a microbiologist by training, and
as a postdoctoral researcher he is using
advanced computational strategies to make
sense of the microbial ecology of complex
habitats.
Gaetan
Benoit is a compuational
biologist at INRIA Rennes. He is develping
new assemblers to integrate multiple
data sources for genome recovery from
metagenomes.
Iva
Veseli. Iva is a
postdoctoral researcher in Meren Lab
at .
She is a computer scientist
and biologist who leverages
computational methods to study
microbial metabolism in
environmental metagenomes. Iva is an
active developper of Anvio.
Martial
Marbouty is a CNRS
researcher in the Lab Spatial
Regulation of Genomes , Institut Pasteur
(Paris, France). Martial is working on human
microbiome and is mainly interested in
studying phages-bacteria relationships. He
has actively participated in the development
of techniques aiming at improving genome
annotations, assembly and metagenomic
analysis using DNA collisions frequencies as
a marker of cellular compartment.
Martin
Sikora is an Associate Professor
at the Section for Geogenetics of the Globe
Institute (Denmark) where he uses ancient
DNA sequencing for Human population genetics
and microbial evolution.
Rob James is
a post-doctoral researcher at the Quadram
Institute of Bioscience (UK). His main
research focus is elucidating the evolution
and selective drivers of antibiotic
resistance in complex ecosystems by using a
range of molecular techniques such as qPCR
and long-read sequencing
Samuel
Chaffron is a CNRS researcher
at Nantes University (Fr) and is using
ecological networks to study complex
microbial assemblages in marine environments
Sebastien
Raguideau is a Post
doctoral researcher at the Earlham Institute
(UK) and part of Chris Quince group. His
main interest is devising ad hoc
bioinformatic pipeline and tools related to
exploration of meta-omics datasets. He has
been working on various subjects such as
AMR, fiber degradation and syntrophy.
Tom
Delmont is a CNRS researcher
at the GENOSCOPE (fr) exploring the plankton
genomic
diversity to better understand the
ecology and evolution of co-occurring
bacterial, eukaryotic and viral lineages
abundant in the surface of the oceans.
Tom takes advantage of deeply sequenced
metagenomes and metatranscriptomes
generated by the Tara Oceans consortium,
transforming raw reads into manually
curated metagenome-assembled genomes and
determining their biogeography,
functional potential and evolution.
Teaching
assistants
Blandine Trouche - INRAE Post-doc
Damien Courtine - U. Auvergne Research
sceintist
Jolann Pommellec - U. Brest PhD
student
Hanna Pye - Quadram Institute Research
scientist.
Hugo Dore - U
Brest Postdoctoral
researcher
Administrative assistant
Stephanie Renard U.
Brest
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